PlantTFDB
Plant Transcription Factor Database
v4.0
Previous version: v3.0
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID OPUNC06G07840.1
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza
Family TCP
Protein Properties Length: 396aa    MW: 39854.9 Da    PI: 8.7337
Description TCP family protein
Gene Model
Gene Model ID Type Source Coding Sequence
OPUNC06G07840.1genomeOGEView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1TCP131.95.9e-41662452133
              TCP   2 agkkdrhskihTkvggRdRRvRlsaecaarfFdLqdeLGfdkdsktieWLlqqakpaikeltgtssssasec.eaesssssasnsssg...... 88 
                      ++k+++++++hTkv+gR+RR+R++a caar+F+L++eLG+++d++tieWLlqqa+pa++++tgt++++a+++  + s +ss+s+ s++      
  OPUNC06G07840.1  66 PPKRTSTKDRHTKVDGRGRRIRMPAICAARVFQLTRELGHKTDGETIEWLLQQAEPAVIAATGTGTIPANFTsLNISLRSSGSSLSIPshlrla 159
                      789******************************************************************9999899999999988888888899 PP

              TCP  89 ....................................kaaksaakskksqksaasalnlak.esr..akarar...are.rtrekmrik 133
                                                          +  +s+ +   s +s +  l+++   s   a a a+   +r+ r++++m+++
  OPUNC06G07840.1 160 glagaphfggaraadawdrvvglgfgggadapssatS--SSSSPLLLSFHSGSVGLDVSPsASTspAAAAANtdlSRKrRWEQEMQQQ 245
                      9999999999999999999999999999999886422..3333555555555555666654333232222224555555666666655 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PfamPF036341.2E-4370249IPR005333Transcription factor, TCP
PROSITE profilePS5136927.67572126IPR017887Transcription factor TCP subgroup
Sequence ? help Back to Top
Protein Sequence    Length: 396 aa     Download sequence    Send to blast
MDFTGDGGGG RRPNFPLQLL GKKEEQTCST SQSAGAGGGG VVVVGANGSA EAQGELQLRT  60
TKVAPPPKRT STKDRHTKVD GRGRRIRMPA ICAARVFQLT RELGHKTDGE TIEWLLQQAE  120
PAVIAATGTG TIPANFTSLN ISLRSSGSSL SIPSHLRLAG LAGAPHFGGA RAADAWDRVV  180
GLGFGGGADA PSSATSSSSS PLLLSFHSGS VGLDVSPSAS TSPAAAAANT DLSRKRRWEQ  240
EMQQQQYHQQ MAGYTQSQIP AGTVWMVPSS NAQAAGGGAP PGGGGESIWT FPQSGSGGGG  300
GAATVYRGVP SGLHFMNFPG TPMALLPGGQ QLGLAGAGGG GEGHSGILAA LNAYRAQAGQ  360
PDAGAAAQNG AHGSSQHQHH GGGGDERHES MSASDS
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAK0642400.0AK064240.1 Oryza sativa Japonica Group cDNA clone:002-105-B01, full insert sequence.
GenBankAP0035130.0AP003513.2 Oryza sativa Japonica Group genomic DNA, chromosome 6, PAC clone:P0690H04.
GenBankAP0035690.0AP003569.3 Oryza sativa Japonica Group genomic DNA, chromosome 6, PAC clone:P0425F05.
GenBankAP0149620.0AP014962.1 Oryza sativa Japonica Group DNA, chromosome 6, cultivar: Nipponbare, complete sequence.
GenBankCP0126140.0CP012614.1 Oryza sativa Indica Group cultivar RP Bio-226 chromosome 6 sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_006655935.11e-154PREDICTED: transcription factor TCP14-like
SwissprotQ93Z007e-51TCP14_ARATH; Transcription factor TCP14
TrEMBLA0A0E0L9K80.0A0A0E0L9K8_ORYPU; Uncharacterized protein
STRINGOB06G17670.11e-154(Oryza brachyantha)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP37443479
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G69690.13e-45TCP family protein